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A Human Liver Cell Atlas reveals Heterogeneity and Epithelial Progenitors

https://doi.org/10.1038/s41586-019-1373-2

Nadim Aizarani , Antonio Saviano, Sagar, Laurent Mailly, Sarah Durand, Josip S. Herman, Patrick Pessaux, Thomas F. Baumert , Dominic Grün

Identified clusters after k-medoids clustering and sorted samples

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Compare one cluster against all the other clusters

mean.ncl = mean expression of gene not in cluster
mean.cl = mean expression of gene in cluster
fc = fold change compared to all other clusters
pv = p-value
padj = adjusted p-value




Plot gene expression in tSNE-Map




Compare gene expression of two clusters





MA Plot for cluster comparison



Plot gene expression in tSNE-Map



Violinplots of gene expression for all clusters